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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
18
total RNA-seq
4
DNase-seq
4
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
18
Transcription
2
DNA binding
1
DNA methylation
Target of assay
3
histone
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
6
June, 2019
February, 2020
1
July, 2019
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
53
tissue
4
primary cell
Organ
790
pancreas
658
liver
598
connective tissue
456
adipose tissue
428
epithelium
201
heart
194
kidney
159
bone element
156
vasculature
151
blood vessel
117
artery
87
brain
70
limb
68
blood
68
bodily fluid
61
musculature of body
57
eye
20
lung
19
spleen
18
nerve
18
ureter
17
embryo
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
57
AMP-T2D consortium
biosample_type!
stem cell
month_released!
August, 2021
February, 2020
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina
15
2
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
1
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