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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ATAC-seq
9
total RNA-seq
4
DNase-seq
3
ChIP-seq
1
RRBS
Assay category
35
DNA accessibility
9
Transcription
3
DNA binding
1
DNA methylation
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
39
February, 2023
October, 2019
February, 2021
7
June, 2019
1
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
48
Homo sapiens
Biosample type
43
tissue
5
primary cell
Organ
896
pancreas
781
liver
457
epithelium
319
heart
316
kidney
224
connective tissue
200
brain
123
vasculature
117
blood vessel
104
adipose tissue
96
musculature of body
69
blood
69
bodily fluid
49
artery
47
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
48
AMP
Genome assembly (visualization)
38
hg19
6
GRCh38
Lab
48
AMP-T2D consortium
biosample_type!
stem cell
month_released!
February, 2021
October, 2019
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
retinal pigment epithelial cell
1
3
1
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