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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
total RNA-seq
103
ATAC-seq
40
single cell RNA-seq
23
ChIP-seq
1
pCHi-C
Assay category
246
Transcription
103
DNA accessibility
23
DNA binding
Target of assay
27
histone
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
62
December, 2017
59
September, 2020
57
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
256
bam
236
bigWig
189
tsv
41
fastq
23
tagAlign
19
zippedFastqFolder
Organism
373
Homo sapiens
Biosample type
206
primary cell
166
tissue
1
cell line
Organ
167
liver
19
epithelium
19
pancreas
Project
269
AMP
59
HPAP
45
T1D
Genome assembly (visualization)
233
hg19
191
GRCh38
Lab
269
AMP-T2D consortium
59
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
biosample_type!
stem cell
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
373 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
15
2
macrophage
11
+ See 27 more…
tissue
liver
143
23
cell line
HepG2
1
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