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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
76
total RNA-seq
19
ATAC-seq
7
DNase-seq
4
single cell RNA-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
RRBS
Assay category
80
DNA binding
80
Transcription
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
46
histone
46
histone modification
24
broad histone mark
23
transcription factor
21
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
69
February, 2021
68
August, 2017
17
June, 2019
13
February, 2023
6
July, 2019
6
November, 2020
4
August, 2021
3
October, 2019
2
April, 2018
2
July, 2018
2
May, 2021
Available data
151
bam
145
bigWig
76
tsv
62
bed narrowPeak
57
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
192
Homo sapiens
Biosample type
96
in vitro differentiated cells
59
tissue
37
primary cell
stem cell
Organ
946
pancreas
791
liver
683
connective tissue
524
epithelium
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
191
AMP
1
T1D
Genome assembly (visualization)
163
hg19
142
GRCh38
Lab
187
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
stem cell
organ_slims!
adipose tissue
stomach
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Capture-C
pCHi-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
67
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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tissue
bone tissue
58
islet of Langerhans
1
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
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