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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
53
total RNA-seq
47
WGBS
6
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
69
DNA accessibility
53
DNA methylation
53
Transcription
6
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
38
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
October, 2022
2
August, 2021
2
March, 2020
2
October, 2019
1
November, 2019
Available data
269
bigWig
bam
228
fastq
153
tsv
109
bed narrowPeak
80
zippedFastqFolder
60
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
cool
2
hdf5
Organism
189
Homo sapiens
Biosample type
162
primary cell
28
cell line
tissue
Organ
192
epithelium
181
pancreas
37
liver
28
connective tissue
9
blood
9
bodily fluid
9
kidney
5
vasculature
4
blood vessel
4
brain
vein
1
adipose tissue
1
bone element
1
bone marrow
1
embryo
1
eye
1
heart
1
mammary gland
1
musculature of body
Project
152
HPAP
38
AMP
Genome assembly (visualization)
14
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
32
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
3
audit script error
biosample_type!
tissue
files.file_type!
bam
month_released!
August, 2017
organ_slims!
vein
BIOSAMPLE
ASSAY
190 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
+ See 8 more…
cell line
EndoC_BH1
18
1
6
2
1
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