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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
21
ATAC-seq
16
pCHi-C
8
total RNA-seq
1
DNAme array
Assay category
74
DNA binding
21
DNA accessibility
8
Transcription
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
134
May, 2022
120
May, 2021
110
February, 2023
59
September, 2020
58
May, 2020
50
February, 2021
41
August, 2021
17
March, 2020
15
August, 2017
13
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
6
January, 2018
6
November, 2020
5
March, 2023
4
October, 2022
2
December, 2019
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
November, 2019
1
September, 2018
Available data
265
bigWig
bam
135
tsv
133
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
120
Homo sapiens
Biosample type
57
primary cell
47
in vitro differentiated cells
16
cell line
tissue
Organ
16
epithelium
16
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
104
AMP
16
T1D
Genome assembly (visualization)
40
hg19
Lab
98
Kyle Gaulton, UCSD
22
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bam
month_released!
August, 2018
July, 2018
BIOSAMPLE
ASSAY
120 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
16
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