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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
9
total RNA-seq
3
Hi-C
2
STARR-seq
2
pCHi-C
1
RRBS
1
whole genome sequencing assay
Assay category
19
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
12
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
2
July, 2019
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2017
Available data
bam
382
fastq
357
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
16
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
37
Homo sapiens
Biosample type
tissue
35
cell line
2
primary cell
Organ
192
epithelium
181
pancreas
42
connective tissue
37
liver
9
blood
9
bodily fluid
9
kidney
5
vasculature
4
blood vessel
4
brain
2
vein
1
adipose tissue
1
bone element
1
bone marrow
1
embryo
1
eye
1
heart
1
mammary gland
1
musculature of body
Project
37
AMP
Genome assembly (visualization)
18
hg19
Lab
31
Bing Ren, UCSD
6
AMP-T2D consortium
biosample_type!
tissue
files.file_type!
bam
organ_slims!
limb
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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