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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 160ATAC-seq
  • 115total RNA-seq
  • 108ChIP-seq
  • 89single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 31pCHi-C
  • 18Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 218DNA accessibility
  • 208Transcription
  • 108DNA binding
  • 58DNA methylation
  • 183D chromatin structure
  • 1DNA sequencing
Target of assay
  • 70histone
  • 70histone modification
  • 42broad histone mark
  • 28narrow histone mark
  • 24transcription factor
  • 17control
  • 6RNA binding protein
  • 3nucleotide modification
Date released
  • 134May, 2022
  • 120May, 2021
  • 110February, 2023
  • 59September, 2020
  • 58May, 2020
  • 50February, 2021
  • 41August, 2021
  • 17March, 2020
  • 15August, 2017
  • 13July, 2019
  • 8January, 2021
  • 8October, 2019
  • 7August, 2020
  • 6January, 2018
  • 6November, 2020
  • 5March, 2023
  • 4October, 2022
  • 2December, 2019
  • 1August, 2018
  • 1December, 2018
  • 1November, 2017
  • 1November, 2018
  • 1November, 2019
  • 1September, 2018
Available data
  • bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 663Homo sapiens
Biosample type
  • tissue
  • 479primary cell
  • 103in vitro differentiated cells
  • 80cell line
  • 7stem cell
Organ
  • 192epithelium
  • 181pancreas
  • 42connective tissue
  • 37liver
  • 9blood
  • 9bodily fluid
  • 9kidney
  • 5vasculature
  • 4blood vessel
  • 4brain
  • 2vein
  • 1adipose tissue
  • 1bone element
  • 1bone marrow
  • 1embryo
  • 1eye
  • 1heart
  • 1mammary gland
  • 1musculature of body
Project
  • 324HPAP
  • 311AMP
  • 29T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 108hg19
  • 12GRCh38
  • 5hg18
Lab
  • 324Klaus Kaestner, Upenn
  • 182AMP-T2D consortium
  • 111Kyle Gaulton, UCSD
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 54inconsistent ontology term
  • 33audit script error
Audit category:
  • 1inconsistent assembly
biosample_type!
  • tissue
files.file_type!
  • bam
BIOSAMPLE
ASSAY

669 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
...and 4 more
primary cell
Langerhans cell8548
pancreatic alpha cell2942311
pancreatic beta cell1611161
exocrine cell39
CD8-positive, alpha-beta T cell2331
in vitro differentiated cells
embryonic stem cell65371
adipocyte81141
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
cell line
HepG2919222
EndoC_BH118162321
EndoC-BH1
HEK293T2
GM128781
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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