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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
20
ChIP-seq
8
ATAC-seq
3
single cell RNA-seq
2
RRBS
Assay category
60
Transcription
20
DNA binding
8
DNA accessibility
2
DNA methylation
Target of assay
10
control
8
transcription factor
5
histone
5
histone modification
5
narrow histone mark
4
RNA binding protein
Date released
66
February, 2021
9
July, 2019
9
November, 2017
5
June, 2019
1
May, 2021
Available data
96
bam
87
bigWig
60
tsv
29
bed narrowPeak
17
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
bed bed3+
9
fastq
6
tagAlign
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
90
Homo sapiens
Biosample type
tissue
66
cell line
23
primary cell
1
in vitro differentiated cells
Organ
488
epithelium
439
pancreas
423
liver
116
connective tissue
95
vasculature
91
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
34
embryo
20
vein
13
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
90
AMP
Genome assembly (visualization)
86
hg19
81
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
90 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
1
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
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in vitro differentiated cells
cardiac fibroblast
1
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