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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
19
total RNA-seq
15
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
DNase-seq
1
RRBS
1
small RNA-seq
Assay category
72
DNA binding
24
Transcription
16
DNA accessibility
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
20
narrow histone mark
17
transcription factor
10
control
5
RNA binding protein
2
chromatin remodeller
Date released
61
August, 2017
12
June, 2019
10
February, 2021
9
February, 2023
7
July, 2019
5
November, 2020
2
April, 2018
2
August, 2021
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
95
bam
89
bigWig
62
bed narrowPeak
58
fastq
bed bed3+
21
tsv
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
116
Homo sapiens
Biosample type
tissue
84
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
epithelium
439
pancreas
423
liver
116
connective tissue
95
vasculature
91
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
kidney
34
embryo
20
vein
13
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
115
AMP
1
T1D
Genome assembly (visualization)
87
hg19
73
GRCh38
Lab
113
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
tissue
files.file_type!
bed bed3+
organ_slims!
epithelium
kidney
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
60
5
7
1
chondrocyte
5
immature adipocyte
2
cardiac fibroblast
1
osteoblast
1
+ See 2 more…
primary cell
mesenchymal stem cell
7
osteoblast
5
2
cardiac fibroblast
5
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
+ See 5 more…
stem cell
mesenchymal stem cell
1
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