Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 888histone modifications
  • 839target gene predictions
  • 781binding sites
  • 772candidate regulatory elements
  • 716accessible chromatin
  • 573gene expression
  • 162differential activity
  • 92variant allelic effects
  • 60eQTL
  • 50chromatin state
  • 11caQTL
  • 5hQTL
  • 5sQTL
  • 3meQTL
  • 2Fine-mapped variants
  • 2other
  • 1representative DNase hypersensitivity sites
Date released
  • 1949February, 2021
  • 760September, 2022
  • 353May, 2021
  • 352February, 2024
  • 333November, 2021
  • 286September, 2023
  • 226June, 2020
  • 101October, 2022
  • 95May, 2020
  • 82August, 2021
  • 64March, 2023
  • 56January, 2021
  • 50January, 2022
  • 47May, 2022
  • 40May, 2024
  • 27November, 2022
  • 25January, 2020
  • 24March, 2020
  • 19April, 2020
  • 16August, 2017
  • 16February, 2020
  • 9August, 2018
  • 7October, 2019
  • 6February, 2023
  • 6March, 2025
  • 4November, 2019
  • 3November, 2020
  • 2January, 2025
  • 2March, 2024
  • 1July, 2020
  • 1June, 2021
Available data
  • 4157bed bed3+
  • 694tsv
  • 426bigWig
  • bed bed9
  • 108txt
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 9bigBed bed9
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 4916Homo sapiens
Collection Tags
  • 1661ChIP-Atlas
  • 748EpiMap
  • 485AMP
  • 483DGA
  • 471ENCODE
  • 363T2DKP
  • 355T1D
  • 281KPMP
  • 218BLUEPRINT
  • 1744DN
  • 106 T2DKP
  • 55HPAP
  • 55T2D
  • 50CMDGA
  • 45eQTLCatalogue
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
  • 6STARNET
  • 2GTEx
Biosample type
  • tissue
  • 2353primary cell
  • 2173cell line
  • 430in vitro differentiated cells
  • 4stem cell
Organ
  • 851epithelium
  • 342connective tissue
  • 335kidney
  • 189bodily fluid
  • 181blood
  • 169vasculature
  • 160embryo
  • 160pancreas
  • 148skin of body
  • 109blood vessel
  • 103lung
  • 102brain
  • 94liver
  • 71mammary gland
  • 67uterus
  • 63musculature of body
  • 56bone element
  • 54lymph node
  • 53intestine
  • 52penis
  • 52prostate gland
  • 40heart
  • 38extraembryonic component
  • 36large intestine
  • 35eye
  • 31artery
  • 22lymphatic vessel
  • 18vein
  • 14bronchus
  • 12bone marrow
  • 11adrenal gland
  • 11placenta
  • 11stomach
  • 10gonad
  • 10pituitary gland
  • 9esophagus
  • 7limb
  • 7testis
  • 6mouth
  • 6spinal cord
  • 5adipose tissue
  • 5lymphoid tissue
  • 5trachea
  • 4small intestine
  • 3nose
  • 3thyroid gland
  • 2ovary
  • 1pericardium
  • 1thymus
Project
  • 4256AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
Genome assembly (visualization)
  • 4161hg19
  • 797GRCh38
  • 1hg18
biosample_type!
  • tissue
files.file_type!
  • bed bed9
BIOSAMPLE
TYPE

4962 results

search-icontable-tab-icon
Clear Filters
histone modifications
target gene predictions
binding sites
candidate regulatory elements
accessible chromatin
gene expression
differential activity
variant allelic effects
eQTL
chromatin state
caQTL
hQTL
sQTL
meQTL
Fine-mapped variants
other
representative DNase hypersensitivity sites
primary cell
monocyte862118154211
CD8-positive, alpha-beta T cell3057431
endothelial cell1723159212
common myeloid progenitor, CD34-positive1427
B cell101762
cell line
HeLa-S35515
H1-hESC1392118
A5491192211
K5621232711
EndoC_BH11118831
in vitro differentiated cells
neural progenitor cell1555107
hematopoietic multipotent progenitor cell11011911
adipocyte1614414
cardiomyocytes11
embryonic stem cell1116
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego