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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
32
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
Assay category
57
Transcription
32
DNA binding
17
DNA accessibility
6
3D chromatin structure
Target of assay
18
histone
18
histone modification
10
control
9
broad histone mark
9
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
21
October, 2019
9
July, 2019
9
November, 2017
6
June, 2019
1
March, 2020
Available data
106
bam
95
bigWig
57
tsv
37
bed narrowPeak
25
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
12
bed bed3+
9
fastq
6
tagAlign
4
hdf5
2
hic
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
112
Homo sapiens
Biosample type
tissue
66
cell line
46
primary cell
Organ
428
liver
423
epithelium
361
pancreas
136
connective tissue
102
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
52
kidney
37
embryo
22
vein
20
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
112
AMP
Genome assembly (visualization)
104
hg19
93
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
files.file_type!
bed bedMethyl
zippedFastqFolder
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
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