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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
small RNA-seq
Assay category
79
DNA binding
26
DNA accessibility
24
Transcription
1
3D chromatin structure
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
13
February, 2023
11
February, 2021
7
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
August, 2018
1
March, 2020
Available data
95
bam
89
bigWig
62
bed narrowPeak
57
fastq
21
bed bed3+
21
tsv
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
135
Homo sapiens
Biosample type
tissue
96
in vitro differentiated cells
38
primary cell
1
stem cell
Organ
500
epithelium
438
pancreas
428
liver
135
connective tissue
102
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
52
kidney
37
embryo
22
vein
20
brain
13
musculature of body
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
134
AMP
1
T1D
Genome assembly (visualization)
106
hg19
86
GRCh38
Lab
130
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
files.file_type!
bed bedMethyl
month_released!
August, 2018
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
Capture-C
Hi-C
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
osteoblast
2
5
1
1
cardiac fibroblast
5
3
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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