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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
21
ChIP-seq
8
ATAC-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
21
DNA binding
9
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
4
control
4
transcription factor
Date released
66
February, 2021
17
October, 2019
5
July, 2019
1
March, 2020
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
89
Homo sapiens
Biosample type
tissue
66
cell line
23
primary cell
Organ
234
epithelium
182
pancreas
89
vasculature
88
blood vessel
77
heart
73
connective tissue
68
artery
46
liver
45
kidney
18
vein
13
musculature of body
10
embryo
9
blood
9
bodily fluid
7
brain
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
89
AMP
Genome assembly (visualization)
82
hg19
76
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
files.file_type!
bed broadPeak
fastq
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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