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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
7
ChIP-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
60
Transcription
7
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
10
control
Date released
54
February, 2021
12
July, 2019
3
November, 2017
2
June, 2019
1
May, 2021
Available data
96
bam
87
bigWig
60
tsv
bed narrowPeak
17
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
11
bed bed3+
9
fastq
6
tagAlign
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
72
Homo sapiens
Biosample type
tissue
54
cell line
17
primary cell
1
in vitro differentiated cells
Organ
370
epithelium
350
pancreas
102
liver
75
connective tissue
70
vasculature
68
blood vessel
62
heart
56
artery
25
kidney
23
embryo
15
blood
15
bodily fluid
10
brain
9
vein
5
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
72
AMP
Genome assembly (visualization)
68
hg19
60
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
2
primary cell
cardiac fibroblast
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
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in vitro differentiated cells
cardiac fibroblast
1
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