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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
5
total RNA-seq
Assay category
64
DNA binding
5
Transcription
Target of assay
27
histone
27
histone modification
25
transcription factor
15
narrow histone mark
12
broad histone mark
12
control
8
RNA binding protein
7
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
73
September, 2018
70
October, 2019
62
November, 2018
59
September, 2020
56
August, 2021
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
23
January, 2019
20
November, 2019
19
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
October, 2022
Available data
69
bam
69
fastq
56
bigWig
51
bed narrowPeak
29
bigBed narrowPeak
15
bed bed3+
5
tsv
Organism
69
Homo sapiens
Biosample type
tissue
43
in vitro differentiated cells
23
cell line
3
stem cell
Organ
20
liver
19
epithelium
18
blood
18
bodily fluid
13
embryo
Project
69
AMP
Genome assembly (visualization)
61
GRCh38
61
hg19
Lab
69
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
tissue
files.file_type!
bedpe bed3+
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
69 results
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Clear Filters
ChIP-seq
total RNA-seq
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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cell line
GM12878
18
HepG2
5
stem cell
hESC
3
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