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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
23
ChIP-seq
8
ATAC-seq
6
DNase-seq
3
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
23
DNA binding
15
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
control
6
transcription factor
2
RNA binding protein
Date released
64
February, 2021
19
October, 2019
5
July, 2019
4
June, 2019
4
November, 2017
Available data
92
bam
83
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
4
fastq
4
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
96
Homo sapiens
Biosample type
tissue
64
cell line
32
primary cell
Organ
474
epithelium
413
pancreas
367
liver
125
connective tissue
96
vasculature
91
blood vessel
76
heart
66
artery
63
blood
63
bodily fluid
49
kidney
30
embryo
19
vein
15
brain
12
musculature of body
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
96
AMP
Genome assembly (visualization)
92
hg19
86
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bedpe bed3+
target.investigated_as!
control
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
4
8
primary cell
endothelial cell of umbilical vein
15
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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