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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
21
ChIP-seq
8
ATAC-seq
3
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
21
DNA binding
9
DNA accessibility
3
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
4
control
4
transcription factor
Date released
66
February, 2021
17
October, 2019
3
July, 2019
1
March, 2020
Available data
89
bam
75
bigWig
54
tsv
26
bed narrowPeak
14
bigBed narrowPeak
6
tagAlign
5
bed broadPeak
bigBed broadPeak
4
bed bed3+
2
hic
1
bedpe bed3+
1
hdf5
1
tar
Organism
87
Homo sapiens
Biosample type
tissue
66
cell line
21
primary cell
Organ
487
epithelium
440
pancreas
369
liver
130
connective tissue
91
vasculature
89
blood vessel
77
heart
68
artery
45
kidney
42
blood
42
bodily fluid
37
embryo
18
vein
13
musculature of body
brain
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
87
AMP
Genome assembly (visualization)
80
hg19
76
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
files.file_type!
bigBed broadPeak
month_released!
December, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
15
2
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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