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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
5
total RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
8
DNA binding
8
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
8
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
12
July, 2019
5
June, 2019
3
November, 2017
1
May, 2021
Available data
31
bigWig
30
bam
17
bed narrowPeak
17
bigBed narrowPeak
14
bed broadPeak
bigBed broadPeak
11
bed bed3+
9
fastq
8
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
21
Homo sapiens
Biosample type
tissue
20
primary cell
1
in vitro differentiated cells
Organ
455
epithelium
408
pancreas
368
liver
119
connective tissue
69
blood
69
bodily fluid
45
kidney
37
embryo
25
vasculature
23
blood vessel
18
vein
13
musculature of body
11
heart
10
brain
4
eye
3
adipose tissue
2
artery
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
21
AMP
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bigBed broadPeak
month_released!
February, 2021
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
cardiac fibroblast
5
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
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in vitro differentiated cells
cardiac fibroblast
1
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