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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ATAC-seq
11
ChIP-seq
4
pCHi-C
4
total RNA-seq
2
Capture-C
1
RRBS
Assay category
14
DNA accessibility
11
DNA binding
4
Transcription
1
DNA methylation
Target of assay
histone
12
histone modification
11
control
8
broad histone mark
4
narrow histone mark
Date released
13
February, 2023
8
August, 2017
5
February, 2021
3
June, 2019
2
August, 2021
1
August, 2018
1
July, 2019
1
March, 2020
1
May, 2021
1
November, 2020
Available data
62
bam
bigWig
33
fastq
29
bed narrowPeak
21
bed bed3+
21
tsv
10
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
2
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
36
Homo sapiens
Biosample type
tissue
28
in vitro differentiated cells
7
primary cell
1
stem cell
Organ
125
epithelium
110
pancreas
73
liver
36
connective tissue
15
kidney
15
vasculature
14
blood
14
blood vessel
14
bodily fluid
13
heart
10
artery
7
embryo
4
vein
3
musculature of body
2
eye
1
adipose tissue
1
bone element
1
bone marrow
1
brain
1
mammary gland
Project
35
AMP
1
T1D
Genome assembly (visualization)
19
hg19
2
GRCh38
Lab
33
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bigWig
zippedFastqFolder
target.investigated_as!
histone
BIOSAMPLE
ASSAY
36 results
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ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
Capture-C
RRBS
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
+ See 1 more…
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
See all biosamples
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