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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
15
pCHi-C
8
snATAC-seq
5
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
37
DNA binding
8
DNA accessibility
5
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
57
May, 2021
8
January, 2021
5
February, 2023
Available data
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
70
Homo sapiens
Biosample type
tissue
42
in vitro differentiated cells
23
primary cell
5
cell line
Organ
8
blood
8
bodily fluid
bone element
1
bone marrow
1
connective tissue
Project
42
AMP
28
T1D
Lab
324
AMP-T2D consortium
314
Klaus Kaestner, Upenn
70
Kyle Gaulton, UCSD
20
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bigWig
month_released!
March, 2020
organ_slims!
bone element
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
pCHi-C
snATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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cell line
EndoC_BH1
3
2
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