Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 888histone modifications
  • 836target gene predictions
  • 781binding sites
  • 772candidate regulatory elements
  • 564gene expression
  • 433chromatin state
  • 306accessible chromatin
  • 162differential activity
  • 88variant allelic effects
  • 60eQTL
  • 11caQTL
  • 5hQTL
  • 5sQTL
  • 3meQTL
  • 2Fine-mapped variants
  • 2other
  • 1representative DNase hypersensitivity sites
Date released
  • 1943February, 2021
  • 1131September, 2022
  • 345May, 2021
  • 327February, 2024
  • 286September, 2023
  • 226June, 2020
  • 111November, 2021
  • 101October, 2022
  • 69August, 2021
  • 64March, 2023
  • 49May, 2020
  • 46January, 2022
  • 40May, 2022
  • 40May, 2024
  • 28January, 2021
  • 25November, 2022
  • 24March, 2020
  • 16August, 2017
  • 16February, 2020
  • 9August, 2018
  • 6February, 2023
  • 6March, 2025
  • 2January, 2020
  • 2January, 2025
  • 2March, 2024
  • 2October, 2019
  • 1July, 2020
  • 1November, 2019
  • 1November, 2020
Available data
  • 4157bed bed3+
  • 694tsv
  • bigWig
  • 383bed bed9
  • 108txt
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 9bigBed bed9
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 4917Homo sapiens
Collection Tags
  • 1661ChIP-Atlas
  • 1122EpiMap
  • 471ENCODE
  • 451DGA
  • 314T1D
  • 281KPMP
  • 247AMP
  • 205BLUEPRINT
  • 1744DN
  • 116T2DKP
  • 87 T2DKP
  • 55HPAP
  • 48CMDGA
  • 48T2D
  • 45eQTLCatalogue
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
  • 6STARNET
  • 2GTEx
Biosample type
  • tissue
  • 2348cell line
  • 2107primary cell
  • 458in vitro differentiated cells
  • 4stem cell
Organ
  • 742epithelium
  • 332kidney
  • 327connective tissue
  • 214bodily fluid
  • 204blood
  • 178embryo
  • 174skin of body
  • 162vasculature
  • 122pancreas
  • 121lung
  • 108brain
  • 105blood vessel
  • 82mammary gland
  • 79liver
  • 69uterus
  • 65bone element
  • 63prostate gland
  • 62lymph node
  • 62penis
  • 57musculature of body
  • 46intestine
  • 45extraembryonic component
  • 37large intestine
  • 36heart
  • 32eye
  • 30artery
  • 21lymphatic vessel
  • 21vein
  • 14bronchus
  • 11bone marrow
  • 11placenta
  • 10gonad
  • 10pituitary gland
  • 8esophagus
  • 8limb
  • 8mouth
  • 8testis
  • 7spinal cord
  • 6lymphoid tissue
  • 6stomach
  • 5adipose tissue
  • 5adrenal gland
  • 5trachea
  • 4nose
  • 2small intestine
  • 2thyroid gland
  • 1ovary
  • 1pericardium
Project
  • 4482AMP
  • 281KPMP
  • 111ENCODE
  • 32T1D
  • 13community
Genome assembly (visualization)
  • 4127hg19
  • 884GRCh38
  • 1hg18
biosample_type!
  • tissue
files.file_type!
  • bigWig
BIOSAMPLE
TYPE

4919 results

search-icontable-tab-icon
Clear Filters
histone modifications
target gene predictions
binding sites
candidate regulatory elements
gene expression
chromatin state
accessible chromatin
differential activity
variant allelic effects
eQTL
caQTL
hQTL
sQTL
meQTL
Fine-mapped variants
other
representative DNase hypersensitivity sites
cell line
HeLa-S355153
A549119221181
H1-hESC13921811
K5621232771
MCF-7263951
primary cell
monocyte86211524211
common myeloid progenitor, CD34-positive142713
CD8-positive, alpha-beta T cell305731
B cell101728
CD4-positive, alpha-beta memory T cell9149
in vitro differentiated cells
neural progenitor cell15557410
hematopoietic multipotent progenitor cell1101191101
adipocyte1614163
embryonic stem cell11156
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego