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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 189ChIP-seq
  • 178ATAC-seq
  • 113total RNA-seq
  • 89single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 32pCHi-C
  • 13Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 236DNA accessibility
  • 206Transcription
  • 189DNA binding
  • 58DNA methylation
  • 133D chromatin structure
  • 1DNA sequencing
Target of assay
  • 133control
  • 42histone
  • 42histone modification
  • 24broad histone mark
  • 18narrow histone mark
  • 17transcription factor
  • 7RNA binding protein
  • 3nucleotide modification
  • 1recombinant protein
Date released
  • 134May, 2022
  • 107February, 2023
  • 94May, 2021
  • 63February, 2021
  • 58May, 2020
  • 56September, 2020
  • 47November, 2017
  • 43August, 2021
  • 33August, 2017
  • 25October, 2019
  • 15March, 2020
  • 10December, 2017
  • 9July, 2019
  • 9November, 2019
  • 8February, 2018
  • 8January, 2021
  • 8June, 2019
  • 7November, 2020
  • 5March, 2023
  • 5November, 2018
  • 4October, 2022
  • 3January, 2019
  • 2December, 2019
  • 1August, 2018
  • 1December, 2018
  • 1May, 2019
  • 1September, 2018
Available data
  • 1485bam
  • bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 751Homo sapiens
Biosample type
  • tissue
  • 475primary cell
  • 140cell line
  • 135in vitro differentiated cells
  • 7stem cell
Organ
  • 208epithelium
  • 191pancreas
  • 73liver
  • 48connective tissue
  • 18vasculature
  • 17blood vessel
  • 15kidney
  • 14blood
  • 14bodily fluid
  • 13heart
  • 10artery
  • 8embryo
  • 7vein
  • 3musculature of body
  • 2eye
  • 1adipose tissue
  • 1bone element
  • 1bone marrow
  • 1brain
  • 1mammary gland
Project
  • 409AMP
  • 314HPAP
  • 29T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 89hg19
  • 50GRCh38
Lab
  • 339AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 71Kyle Gaulton, UCSD
  • 20Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 73inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 2missing controlled_by
biosample_type!
  • tissue
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

757 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
primary cell
Langerhans cell8548
pancreatic alpha cell62242311
pancreatic beta cell61311161
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22211
cell line
HepG25219222
EndoC_BH1217162321
smooth muscle cell of the coronary artery28
Panc17
GM128786
in vitro differentiated cells
embryonic stem cell3851
adipocyte20511
neural progenitor cell810
cardiomyocytes (cardiac muscle cell)1222
pancreatic endoderm6
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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