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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356total RNA-seq
  • 327ChIP-seq
  • 239ATAC-seq
  • 61single cell RNA-seq
  • 41WGBS
  • 32DNase-seq
  • 31pCHi-C
  • 29snATAC-seq
  • 17Hi-C
  • 9RRBS
  • 6MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 423Transcription
  • 327DNA binding
  • 301DNA accessibility
  • 51DNA methylation
  • 173D chromatin structure
  • 1DNA sequencing
Target of assay
  • 233histone
  • 233histone modification
  • 125broad histone mark
  • 108narrow histone mark
  • 55control
  • 45transcription factor
  • 12RNA binding protein
  • 7recombinant protein
  • 3nucleotide modification
Date released
  • 359May, 2021
  • 148May, 2020
  • 134May, 2022
  • 125February, 2021
  • 90August, 2021
  • 72October, 2019
  • 55June, 2019
  • 34February, 2023
  • 31July, 2019
  • 24March, 2020
  • 21November, 2019
  • 18September, 2020
  • 15August, 2017
  • 12November, 2020
  • 8January, 2021
  • 7December, 2019
  • 5April, 2018
  • 5March, 2023
  • 5May, 2019
  • 4October, 2022
  • 1January, 2018
Available data
  • 1485bam
  • 1397bigWig
  • fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 1167Homo sapiens
Biosample type
  • tissue
  • 679primary cell
  • 253in vitro differentiated cells
  • 235cell line
  • 6stem cell
Organ
  • 252epithelium
  • 183pancreas
  • 97vasculature
  • 94blood vessel
  • 80heart
  • 79connective tissue
  • 68artery
  • 55kidney
  • 48liver
  • 22vein
  • 14musculature of body
  • 12brain
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 5eye
  • 2adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 800AMP
  • 213T1D
  • 155HPAP
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 744hg19
  • 597GRCh38
Lab
  • 675AMP-T2D consortium
  • 291Kyle Gaulton, UCSD
  • 155Klaus Kaestner, Upenn
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 251inconsistent ontology term
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
biosample_type!
  • tissue
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1173 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
HiChIP
small RNA-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
...and 5 more
primary cell
monocyte54851511
Langerhans cell5121
pancreatic alpha cell22251
CD8-positive, alpha-beta T cell43321
pancreatic beta cell13161
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53761
neural progenitor cell72110
adipocyte51481
cardiac precursors (cardiac muscle cell)1911
cell line
EndoC_BH1331519162321
smooth muscle cell of the coronary artery5268
HepG29181212
Panc11311
H1-hESC8
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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