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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
100
ATAC-seq
47
total RNA-seq
1
pCHi-C
Assay category
324
DNA binding
100
DNA accessibility
47
Transcription
Target of assay
244
transcription factor
66
recombinant protein
59
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
10
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
71
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
28
December, 2018
27
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
413
bam
367
bigWig
324
fastq
255
bed narrowPeak
255
bigBed narrowPeak
64
bed broadPeak
64
bigBed broadPeak
46
tsv
12
tagAlign
3
tar
Organism
472
Homo sapiens
Biosample type
316
cell line
tissue
156
primary cell
Organ
316
liver
9
brain
6
epithelium
6
vasculature
3
blood vessel
Project
427
AMP
45
T1D
Genome assembly (visualization)
365
hg19
268
GRCh38
Lab
427
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
files.file_type!
hdf5
BIOSAMPLE
ASSAY
472 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
cell line
HepG2
315
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
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