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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
395
transcription factor
389
histone
389
histone modification
198
broad histone mark
190
narrow histone mark
156
control
89
recombinant protein
84
RNA binding protein
32
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
78
bam
77
bed narrowPeak
77
bigWig
72
fastq
71
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
84
Homo sapiens
Biosample type
63
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
56
liver
8
blood
8
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
84
AMP
Genome assembly (visualization)
76
hg19
71
GRCh38
Lab
78
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
tissue
files.file_type!
ibed
month_released!
December, 2018
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
8
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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