Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
21
ChIP-seq
8
ATAC-seq
4
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
21
DNA binding
13
DNA accessibility
4
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
control
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
19
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
88
bam
79
bigWig
54
tsv
29
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
4
tagAlign
2
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
92
Homo sapiens
Biosample type
tissue
64
cell line
28
primary cell
Organ
479
epithelium
417
pancreas
368
liver
126
connective tissue
97
vasculature
92
blood vessel
76
heart
66
artery
63
blood
63
bodily fluid
49
kidney
20
embryo
20
vein
15
brain
12
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
92
AMP
Genome assembly (visualization)
88
hg19
82
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
files.file_type!
ibed
month_released!
February, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
92 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
4
8
primary cell
endothelial cell of umbilical vein
15
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
See all biosamples
Download