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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
7
ATAC-seq
6
MeRIP-seq
5
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
13
DNA binding
8
DNA accessibility
5
Transcription
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
312
November, 2017
269
May, 2021
162
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
101
August, 2017
73
September, 2018
72
October, 2019
66
August, 2021
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
26
bam
19
bed narrowPeak
17
bigWig
5
tsv
1
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
33
Homo sapiens
Biosample type
tissue
22
cell line
6
primary cell
5
in vitro differentiated cells
Organ
22
epithelium
22
pancreas
6
connective tissue
Project
33
AMP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
27
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
biosample_type!
tissue
files.file_type!
tagAlign
month_released!
April, 2018
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
EndoC_BH1
13
1
6
1
1
primary cell
osteoblast
1
4
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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