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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
25
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
25
transcription factor
3
control
3
nucleotide modification
2
RNA binding protein
chromatin remodeller
Date released
359
May, 2021
309
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
124
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
59
September, 2020
55
June, 2019
55
November, 2018
48
July, 2018
45
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
26
December, 2018
24
March, 2020
21
November, 2019
17
January, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
31
bam
30
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
26
fastq
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
38
Homo sapiens
Biosample type
32
cell line
tissue
6
primary cell
Organ
25
blood
25
bodily fluid
6
connective tissue
6
epithelium
6
pancreas
1
liver
Project
38
AMP
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
32
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
files.file_type!
tagAlign bed3+
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
GM12878
25
EndoC_BH1
6
HepG2
1
primary cell
osteoblast
4
1
1
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