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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
18
ATAC-seq
16
pCHi-C
8
total RNA-seq
1
DNAme array
1
single cell RNA-seq
Assay category
172
DNA binding
18
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
149
histone
149
histone modification
83
broad histone mark
66
narrow histone mark
15
transcription factor
8
control
5
RNA binding protein
Date released
318
November, 2017
204
May, 2021
102
May, 2020
98
August, 2017
63
February, 2021
62
November, 2018
60
August, 2021
60
February, 2023
54
May, 2022
40
September, 2020
35
June, 2019
32
October, 2019
28
December, 2018
27
December, 2017
24
February, 2018
18
January, 2019
12
September, 2018
8
January, 2021
6
January, 2018
5
July, 2019
5
March, 2023
5
November, 2019
4
March, 2020
2
November, 2020
1
August, 2018
1
October, 2022
Available data
267
bigWig
240
bam
141
bed narrowPeak
tsv
87
tagAlign
12
fastq
2
bed bed3+
1
csv
Organism
216
Homo sapiens
Biosample type
166
primary cell
50
in vitro differentiated cells
tissue
Organ
66
pancreas
epithelium
1
bone element
1
bone marrow
1
connective tissue
Project
116
AMP
100
T1D
Genome assembly (visualization)
151
hg19
111
GRCh38
Lab
182
Kyle Gaulton, UCSD
34
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
missing controlled_by
biosample_type!
tissue
files.file_type!
tsv
organ_slims!
epithelium
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
single cell RNA-seq
primary cell
monocyte
85
13
1
1
1
CD8-positive, alpha-beta T cell
33
1
2
pancreatic endocrine cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
+ See 12 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cardiomyocytes
3
See all biosamples
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