Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
115
ChIP-seq
23
ATAC-seq
Assay category
150
Transcription
115
DNA binding
23
DNA accessibility
Target of assay
102
histone
102
histone modification
51
broad histone mark
51
narrow histone mark
9
control
4
transcription factor
Date released
323
November, 2017
239
May, 2021
120
February, 2021
112
August, 2017
90
May, 2020
72
September, 2018
64
October, 2019
61
November, 2018
55
June, 2019
49
August, 2021
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
27
December, 2018
23
January, 2019
20
November, 2019
18
July, 2019
7
March, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
Available data
312
bigWig
288
bam
175
bed narrowPeak
159
tsv
114
tagAlign
7
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
288
Homo sapiens
Biosample type
153
primary cell
122
in vitro differentiated cells
tissue
13
cell line
Organ
14
epithelium
10
embryo
8
pancreas
4
liver
1
connective tissue
1
heart
Project
152
AMP
136
T1D
Genome assembly (visualization)
279
GRCh38
278
hg19
Lab
153
AMP-T2D consortium
135
Kyle Gaulton, UCSD
Audit category:
73
inconsistent ontology term
biosample_type!
tissue
month_released!
September, 2020
BIOSAMPLE
ASSAY
288 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
51
84
13
hepatocyte
4
embryonic stem cell
1
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
20
10
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
H1-hESC
8
EndoC_BH1
4
1
See all biosamples
Download