Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 856ChIP-seq
  • 381total RNA-seq
  • 111ATAC-seq
  • 100single cell RNA-seq
  • 32DNase-seq
  • 2small RNA-seq
  • 1FAIRE-seq
  • 1WGBS
  • 1pCHi-C
Assay category
  • 856DNA binding
  • 483Transcription
  • 144DNA accessibility
  • 1DNA methylation
Target of assay
  • 396transcription factor
  • 319histone
  • 319histone modification
  • 162narrow histone mark
  • 156broad histone mark
  • 139control
  • 89recombinant protein
  • 80RNA binding protein
  • 34chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 323November, 2017
  • 239May, 2021
  • 120February, 2021
  • 112August, 2017
  • 90May, 2020
  • 72September, 2018
  • 64October, 2019
  • 61November, 2018
  • 55June, 2019
  • 49August, 2021
  • 48July, 2018
  • 46December, 2017
  • 43April, 2018
  • 39February, 2018
  • 27December, 2018
  • 23January, 2019
  • 20November, 2019
  • 18July, 2019
  • 7March, 2020
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 1485Homo sapiens
Biosample type
  • tissue
  • 609primary cell
  • 582cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 393liver
  • 317epithelium
  • 260pancreas
  • 98vasculature
  • 95connective tissue
  • 93blood vessel
  • 79heart
  • 68artery
  • 60blood
  • 60bodily fluid
  • 46kidney
  • 36embryo
  • 20vein
  • 17brain
  • 13musculature of body
  • 4eye
  • 2adipose tissue
  • 1pericardium
Project
  • 1301AMP
  • 184T1D
Genome assembly (visualization)
  • 1350hg19
  • 1256GRCh38
Lab
  • 1305AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
Audit category:
  • 208inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1485 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
FAIRE-seq
WGBS
pCHi-C
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego