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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
6
DNA binding
4
DNA accessibility
2
Transcription
Target of assay
6
control
Date released
5
December, 2017
4
February, 2023
2
August, 2021
2
February, 2021
2
May, 2021
1
August, 2017
Available data
1485
bam
1397
bigWig
981
fastq
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
16
Homo sapiens
Biosample type
tissue
11
in vitro differentiated cells
3
primary cell
1
cell line
1
stem cell
Organ
8
connective tissue
1
embryo
1
liver
Project
16
AMP
Genome assembly (visualization)
16
hg19
6
GRCh38
Lab
12
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bed narrowPeak
hdf5
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
primary cell
CD8-positive, alpha-beta T cell
2
osteoblast
1
cell line
HepG2
1
stem cell
hESC
1
See all biosamples
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