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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
10
DNA binding
5
3D chromatin structure
4
DNA accessibility
2
Transcription
Target of assay
6
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
December, 2017
7
August, 2017
5
August, 2021
4
February, 2023
4
July, 2019
2
February, 2021
2
May, 2021
1
October, 2019
Available data
1439
bam
1361
bigWig
935
fastq
797
bed narrowPeak
524
tsv
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
53
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
25
Homo sapiens
Biosample type
tissue
13
in vitro differentiated cells
10
primary cell
2
cell line
Organ
15
connective tissue
5
epithelium
5
liver
3
brain
2
blood vessel
2
vasculature
1
pancreas
Project
25
AMP
Genome assembly (visualization)
25
hg19
11
GRCh38
Lab
21
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
4
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
25 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 2 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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