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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
10
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
32
DNA accessibility
10
DNA binding
2
Transcription
Target of assay
6
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
24
June, 2019
December, 2017
7
August, 2017
5
August, 2021
4
February, 2023
3
October, 2019
2
February, 2021
2
May, 2021
1
November, 2020
Available data
1439
bam
1361
bigWig
935
fastq
797
bed narrowPeak
524
tsv
467
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
53
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
48
Homo sapiens
Biosample type
tissue
33
primary cell
13
in vitro differentiated cells
2
cell line
Organ
20
connective tissue
19
epithelium
10
kidney
6
liver
6
vasculature
5
brain
4
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
1
pancreas
Project
48
AMP
Genome assembly (visualization)
41
hg19
38
GRCh38
Lab
44
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
4
inconsistent control read length
biosample_type!
tissue
files.file_type!
hdf5
month_released!
December, 2017
BIOSAMPLE
ASSAY
48 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 18 more…
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
Panc1
1
See all biosamples
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