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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
6
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
14
DNA binding
7
DNA accessibility
2
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
narrow histone mark
5
broad histone mark
2
RNA binding protein
2
transcription factor
Date released
13
October, 2019
4
June, 2019
4
November, 2017
2
July, 2019
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
23
Homo sapiens
Biosample type
tissue
23
primary cell
Organ
302
liver
78
epithelium
54
blood
54
bodily fluid
33
connective tissue
30
pancreas
23
vasculature
19
blood vessel
17
kidney
14
brain
13
vein
9
musculature of body
6
heart
3
embryo
3
eye
Project
23
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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