Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 28DNase-seq
  • 25ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
Assay category
  • 32DNA accessibility
  • 25DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 13histone
  • 13histone modification
  • 7narrow histone mark
  • 6broad histone mark
  • 6control
  • 6transcription factor
Date released
  • 24June, 2019
  • 15December, 2017
  • 7August, 2017
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 4October, 2019
  • 2February, 2021
  • 2May, 2021
  • 1November, 2020
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 68Homo sapiens
Biosample type
  • tissue
  • 37primary cell
  • 25in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 21connective tissue
  • 21epithelium
  • 10kidney
  • 8brain
  • 8vasculature
  • 7liver
  • 6blood vessel
  • 3embryo
  • 3heart
  • 2pancreas
  • 2vein
  • 1eye
  • 1musculature of body
Project
  • 68AMP
Genome assembly (visualization)
  • 61hg19
  • 54GRCh38
Lab
  • 64AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

68 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego