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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ATAC-seq
Assay category
14
DNA accessibility
Date released
8
February, 2023
6
February, 2021
Available data
1485
bam
1380
bigWig
940
fastq
819
bed narrowPeak
515
tsv
481
bigBed narrowPeak
160
tagAlign
134
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
Organism
14
Homo sapiens
Biosample type
12
in vitro differentiated cells
tissue
1
cell line
1
primary cell
Organ
10
connective tissue
1
liver
Project
14
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
11
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
biosample_type!
tissue
lab.title!
Bing Ren, UCSD
month_released!
September, 2020
BIOSAMPLE
ASSAY
14 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
primary cell
osteoblast
1
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