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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
RRBS
7
ATAC-seq
1
WGBS
Assay category
11
DNA methylation
7
DNA accessibility
Date released
9
July, 2019
5
February, 2023
2
February, 2021
1
August, 2017
1
November, 2018
Available data
1442
bam
1354
bigWig
943
fastq
833
bed narrowPeak
481
bigBed narrowPeak
481
tsv
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
18
Homo sapiens
Biosample type
tissue
11
primary cell
5
in vitro differentiated cells
2
cell line
Organ
7
connective tissue
6
epithelium
3
kidney
3
liver
1
brain
1
eye
1
heart
1
musculature of body
1
vasculature
Project
18
AMP
Genome assembly (visualization)
17
hg19
3
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
biosample_type!
tissue
lab.title!
Stephen Parker, UMich
month_released!
April, 2018
BIOSAMPLE
ASSAY
18 results
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RRBS
ATAC-seq
WGBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
1
See all biosamples
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