Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
30
DNase-seq
Assay category
30
DNA accessibility
30
DNA binding
Target of assay
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
24
June, 2019
17
November, 2017
13
August, 2017
5
October, 2019
1
November, 2020
Available data
1089
bam
994
bigWig
606
fastq
524
tsv
439
bed narrowPeak
zippedFastqFolder
151
tagAlign
141
bigBed narrowPeak
62
bed bed3+
60
bed broadPeak
60
bigBed broadPeak
13
bedpe bed3+
12
hic
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
60
Homo sapiens
Biosample type
tissue
44
primary cell
15
cell line
1
in vitro differentiated cells
Organ
20
epithelium
16
liver
10
kidney
10
vasculature
8
brain
7
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
60
AMP
Genome assembly (visualization)
55
GRCh38
53
hg19
Lab
60
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
files.file_type!
bed bedMethyl
zippedFastqFolder
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
60 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
11
1
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
cell line
HepG2
14
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download