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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
28
DNase-seq
Assay category
77
DNA binding
28
DNA accessibility
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
24
June, 2019
15
August, 2017
1
November, 2020
1
October, 2019
Available data
1465
bam
1382
bigWig
981
fastq
820
bed narrowPeak
524
tsv
468
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
105
bed broadPeak
105
bigBed broadPeak
66
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
105
Homo sapiens
Biosample type
tissue
59
cell line
45
primary cell
1
in vitro differentiated cells
Organ
60
liver
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
105
AMP
Genome assembly (visualization)
98
hg19
89
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
month_released!
February, 2020
organ_slims!
ovary
vein
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
2
1
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in vitro differentiated cells
adipocyte
1
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