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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
25
DNase-seq
Assay category
46
DNA binding
25
DNA accessibility
Target of assay
46
transcription factor
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
44
November, 2017
19
June, 2019
4
August, 2017
3
October, 2019
1
November, 2020
Available data
1130
bam
1014
bigWig
797
fastq
516
tsv
480
bed narrowPeak
380
bigBed narrowPeak
153
zippedFastqFolder
71
bed broadPeak
71
bigBed broadPeak
47
bed bed3+
25
tagAlign
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
4
tar
4
txt
3
cool
2
csv
2
hdf5
2
ibed
1
vcf
Organism
71
Homo sapiens
Biosample type
tissue
45
cell line
25
primary cell
1
in vitro differentiated cells
Organ
46
liver
18
epithelium
10
kidney
brain
8
vasculature
7
connective tissue
5
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
1
pancreas
Project
71
AMP
Genome assembly (visualization)
64
hg19
57
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
tissue
month_released!
January, 2019
organ_slims!
brain
target.investigated_as!
histone
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
Panc1
1
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
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