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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
2
ATAC-seq
1
whole genome sequencing assay
Assay category
324
DNA binding
2
DNA accessibility
1
DNA sequencing
Target of assay
290
transcription factor
81
recombinant protein
54
RNA binding protein
31
histone
31
histone modification
21
chromatin remodeller
16
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
44
November, 2018
18
August, 2021
14
December, 2017
June, 2019
1
February, 2021
1
October, 2019
Available data
391
bam
382
fastq
355
bigWig
326
bed narrowPeak
307
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tsv
16
tagAlign
5
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
327
Homo sapiens
Biosample type
309
cell line
tissue
14
in vitro differentiated cells
4
primary cell
Organ
327
liver
121
epithelium
91
pancreas
54
blood
54
bodily fluid
48
connective tissue
29
vasculature
27
blood vessel
18
kidney
14
embryo
13
vein
12
artery
12
heart
6
brain
Project
327
AMP
Genome assembly (visualization)
322
hg19
280
GRCh38
Lab
312
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
month_released!
June, 2019
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
ATAC-seq
whole genome sequencing assay
cell line
HepG2
307
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
Liver fetal (hepatocyte)
1
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