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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
Assay category
81
DNA binding
Target of assay
394
transcription factor
331
histone
331
histone modification
167
broad histone mark
163
narrow histone mark
88
recombinant protein
79
RNA binding protein
34
chromatin remodeller
2
other context
2
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
82
bam
81
bed narrowPeak
81
bigWig
76
fastq
75
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
1
tar
Organism
81
Homo sapiens
Biosample type
65
cell line
tissue
10
primary cell
6
in vitro differentiated cells
Organ
56
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
81
AMP
Genome assembly (visualization)
80
hg19
75
GRCh38
Lab
80
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
in vitro differentiated cells
adipocyte
4
hepatocyte
2
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