Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 730ChIP-seq
  • 70ATAC-seq
  • 32DNase-seq
  • 1FAIRE-seq
Assay category
  • 730DNA binding
  • 103DNA accessibility
Target of assay
  • 394transcription factor
  • 331histone
  • 331histone modification
  • 167broad histone mark
  • 163narrow histone mark
  • 88recombinant protein
  • 79RNA binding protein
  • 34chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 255November, 2017
  • 133May, 2021
  • 76August, 2017
  • 56November, 2018
  • 47June, 2019
  • 46September, 2018
  • 42August, 2021
  • 38October, 2019
  • 36December, 2017
  • 27December, 2018
  • 17November, 2019
  • 16February, 2018
  • 15February, 2021
  • 15January, 2019
  • 5September, 2017
  • 4May, 2019
  • 2February, 2023
  • 2November, 2020
  • 1March, 2020
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 833Homo sapiens
Biosample type
  • tissue
  • 404cell line
  • 295primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 328liver
  • 139epithelium
  • 91pancreas
  • 62connective tissue
  • 54blood
  • 54bodily fluid
  • 33vasculature
  • 30kidney
  • 29blood vessel
  • 18heart
  • 14embryo
  • 13vein
  • 12artery
  • 11brain
  • 9musculature of body
  • 3eye
Project
  • 747AMP
  • 86T1D
Genome assembly (visualization)
  • 821hg19
  • 749GRCh38
Lab
  • 701AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 59inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 44missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

833 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG23071
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego