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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 10Hi-C
  • 3pCHi-C
Assay category
  • 103D chromatin structure
Date released
  • 5March, 2020
  • 3October, 2022
  • 2October, 2019
  • 1August, 2018
  • 1August, 2021
  • 1November, 2019
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 13Homo sapiens
Biosample type
  • tissue
  • 7in vitro differentiated cells
  • 4primary cell
  • 2cell line
Organ
  • 5epithelium
  • 4pancreas
  • 1adipose tissue
  • 1blood vessel
  • 1connective tissue
  • 1liver
  • 1vasculature
  • 1vein
Project
  • 10AMP
  • 3HPAP
Genome assembly (visualization)
  • 12hg19
Lab
  • 9AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
Audit category:
  • 7inconsistent ontology term
  • 3audit script error
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

13 results

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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
cardiac precursors (cardiac muscle cell)1
white fat cell1
primary cell
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
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