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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
RRBS
2
pCHi-C
1
WGBS
Assay category
11
DNA methylation
Date released
9
July, 2019
2
March, 2020
1
August, 2017
1
November, 2018
Available data
1329
bam
1223
bigWig
908
fastq
666
bed narrowPeak
524
tsv
443
bigBed narrowPeak
153
zippedFastqFolder
93
bed broadPeak
93
bigBed broadPeak
89
tagAlign
62
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
13
Homo sapiens
Biosample type
tissue
10
primary cell
2
in vitro differentiated cells
1
cell line
Organ
6
epithelium
3
kidney
2
liver
1
brain
1
connective tissue
1
eye
1
heart
1
musculature of body
1
vasculature
Project
13
AMP
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
tissue
files.file_type!
hdf5
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
13 results
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RRBS
pCHi-C
WGBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
See all biosamples
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