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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 30DNase-seq
Assay category
  • 79DNA binding
  • 30DNA accessibility
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 64November, 2017
  • 24June, 2019
  • 15August, 2017
  • 5October, 2019
  • 1November, 2020
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 109Homo sapiens
Biosample type
  • tissue
  • 59cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 60liver
  • 22epithelium
  • 12vasculature
  • 11brain
  • 10kidney
  • 8blood vessel
  • 7connective tissue
  • 4vein
  • 3heart
  • 1eye
  • 1musculature of body
  • 1pancreas
Project
  • 109AMP
Genome assembly (visualization)
  • 102hg19
  • 91GRCh38
Lab
  • 109AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

109 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast131
endothelial cell of umbilical vein22
astrocyte of the cerebellum21
brain microvascular endothelial cell21
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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