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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
22
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
32
DNA binding
24
DNA accessibility
Target of assay
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
14
December, 2017
14
September, 2018
12
October, 2019
5
September, 2017
4
June, 2019
4
May, 2019
3
August, 2017
Available data
317
bam
301
bigWig
257
fastq
153
tsv
139
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
56
Homo sapiens
Biosample type
41
primary cell
14
in vitro differentiated cells
1
cell line
Organ
255
liver
56
epithelium
54
blood
54
bodily fluid
28
pancreas
11
blood vessel
11
connective tissue
11
vasculature
11
vein
8
musculature of body
7
kidney
3
heart
2
eye
Project
56
AMP
Genome assembly (visualization)
56
hg19
55
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
kidney epithelial cell
4
+ See 3 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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