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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
ChIP-seq
32
DNase-seq
24
ATAC-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
370
DNA binding
57
DNA accessibility
1
DNA sequencing
Target of assay
289
transcription factor
81
recombinant protein
78
histone
78
histone modification
63
RNA binding protein
40
narrow histone mark
38
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
47
June, 2019
44
November, 2018
23
October, 2019
20
August, 2017
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
August, 2021
1
November, 2020
Available data
1425
bam
1342
bigWig
921
fastq
779
bed narrowPeak
524
tsv
427
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
428
Homo sapiens
Biosample type
tissue
302
cell line
109
primary cell
17
in vitro differentiated cells
Organ
310
liver
76
epithelium
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
428
AMP
Genome assembly (visualization)
416
hg19
389
GRCh38
Lab
427
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
23
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
organ_slims!
blood
limb
BIOSAMPLE
ASSAY
428 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
whole genome sequencing assay
cell line
HepG2
293
1
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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